A method, system and program product for validating a runtime environment deployed across multiple computing systems is disclosed. The method includes generating, using a validation tool, a first set of checksums corresponding to message flows in a first instance of a runtime module deployed on a first system, the validation tool excluding in the first set of checksums generated any unique system data corresponding to the first system, while reading only common executable data of the runtime module. The method further includes running the validation tool on at least a second system for generating a second set of checksums corresponding to message flows in a second instance of the runtime module deployed on the second system. Further, the method includes comparing the second set of checksums to the first set of checksums to validate that the runtime module deployed on the second system is identical to the first system.