An apparatus and method for compensation for variation in timing skew in a disc drive having at least one rotating disc is provided. A first head is positioned over a first disc surface and a second head is positioned over a second disc surface. The first disc surface includes a track having a first plurality of sectors and the second disc surface includes a track having a second plurality of sectors. Each sector of the second plurality of the sectors corresponds to a different sector of the first plurality of sectors, thereby forming a plurality of pairs of corresponding sectors. A timing skew value for each pair of corresponding sectors is computed to obtain a sequence of timing skew values. Data related to the sequence of timing skew values is utilized to compensate for variation in timing skew.