In a storing unit of a medical image processing apparatus, first 3D image corresponding to a first period and second 3D image data corresponding to a second period are stored. The first 3D image data corresponds to a period before contrast agent injection operation and/or therapeutic operation. The second 3D image data corresponds to a period after the contrast agent injection operation and/or therapeutic operation. A 3D subtracting unit subtracts the first 3D image data from the second 3D image data. In 3D subtraction image data, a portion having undergone a change due to contrast agent injection operation and/or therapeutic operation is emphasized. A pseudo 3D image data generating unit generates pseudo 3D image data on the basis of 3D subtraction image data. A displaying unit displays the pseudo 3D image data.