The invention relates to a method for segmentation of a three-dimensional structure in a three-dimensional data set, especially a medical data set. The method uses a three-dimensional deformable model, wherein the surface of the model consists of a net of polygonal meshes. The meshes are split into groups, and a feature term is assigned to each group. After the model has been placed over the structure of interest, the deformable model is recalculated in consideration of the feature terms of each group.