A filter system includes a set of modules, each module including screen assemblies and filter media sandwiched between the screen assemblies. A plurality of control assemblies are associated with each of the modules. Each of the control assemblies is in fluid communication with a corresponding module to control flow through the corresponding module. The control assemblies selectively control fluid in each of the modules between at least one of a forward flow through the screen assemblies to treat an influent flow, a bypass flow to bypass at least one of the modules, and a reverse flow to backwash a given filter media. A method of filtering influent includes providing an influent flow to a set of modules, each module including screen assemblies and filter media sandwiched between the screen assemblies. The influent is filtered by directing the influent through the set of modules. A given module is bypassed when the given module becomes occluded. The occluded module is backwashed by providing a reverse flow through the screen assemblies and the filter media.