Systems, methods, and computer programming for collecting data using a mass spectrometer comprising a particle detector or other mass analyzer. A data collection such as a tree or array structure which includes data records for storing detected data is maintained in volatile or persistent memory. Data is received from the mass analyzer. Whether the collection contains data records corresponding to newly-acquired data signals is determined. If the collection does not contain records corresponding to the newly-received records, a new record is added. In either case, the record corresponding to the received data record is updated to reflect reception of the newly-acquired signal.