Disclosed are methods and computer program products for automatically identifying and compensating for stop words in a text processing system. This automatic stop word compensation allows such operations as performing queries on an abstract mathematical space built using all words from all texts, with the ability to compensate for the skew that the inclusion of the stop words may have introduced into the space. Documents are represented by document vectors in the abstract mathematical space. To compensate for stop words, a weight function is applied to a predetermined component of the document vectors associated with frequently occurring word(s) contained in the documents. The weight function may be applied dynamically during query processing. Alternatively, the weight function may be applied statically to all document vectors.