Disclosed are a system and method for generating three-dimensional objects to represent files in a three-dimensional environment. A primary classifier classifies stored files into groups based on a first set of properties and generates three-dimensional mesh objects to represent each file. The mesh objects are the same within each group and distinguish the files from group to group. A secondary classifier further classifies each group of files into sub-groups based on a second set of properties and deforms the mesh objects in each sub-group in a particular manner to distinguish files from sub-group to sub-group. Additional classifiers modify the deformed mesh objects to further distinguish files within each sub-group (e.g., by varying the shape, texture, animation, etc.). Each three-dimensional object can then be embedded into a three-dimensional graphical user interface as a selection tool that provides visual cues regarding the contents of a particular file.