A disk drive is disclosed comprising a disk, and a head actuated radially over the disk. A first linear acceleration signal is generated representing a first acceleration disturbance, a second linear acceleration signal is generated representing a second acceleration disturbance, and a third linear acceleration signal is generated representing a thermal popping disturbance. The first linear acceleration signal is combined with the third linear acceleration signal to generate a fourth linear acceleration signal representing a combined physical shock disturbance and thermal popping disturbance.