A system and method for remotely controlling a debugging unit, which can easily and accurately control the debugging unit in real time from a remote location regardless without data loss are disclosed. The system for remotely controlling a debugging unit comprises: a first protocol converter for converting a first or a second message between User Datagram Protocol (UDP) and Transmission Control Protocol (TCP), wherein the first message contains a debugging command and the second message contains debugging results; and a second protocol converter for converting a first or a second message between UDP and TCP.