There is disclosed a method for performing channel assignment in a base station for a mobile communication system. Upon receipt of a request for assigning a channel to a mobile station, a base station transceiver system (BTS) generates a connect message including channel information, which indicates a Walsh code, out of 256 Walsh codes, to be used for a channel to be assigned to the mobile station, and a quasi-orthogonal function (QOF) index. The BTS transmits the generated connect message to a base station controller (BSC). The BSC generates a connect ACK message for acknowledging the channel assignment-related information included in the connect message and transmits the generated connect ACK message to the BTS. Upon receipt of the connect ACK message, in the BTS assigns the channel that was acknowledged by the BSC to the mobile station.