Provided is a method, system, and program for navigating breakpoints in a program in a debugging mode. A user interface is rendered to display at least one program corresponding to at least one object file being executed in a debugging mode. A list is maintained of breakpoints in the at least one program. Code is rendered from one program including a selected first breakpoint. User input is received to access a second breakpoint and a selection is made from the list of the second breakpoint in one of the program. Code is rendered from one program including the selected second breakpoint