An experiment analysis system eliminates the need to enter sample information each time an analysis processing unit is activated. The experiment analysis system includes a measurement device for measuring the expression levels of a sample using a reagent, an experiment processing unit for processing measurement data transmitted from the measurement device and creating an experimental result file, and a plurality of analysis processing units for analyzing the experimental results based on the experimental result file. The experiment processing unit transmits the experimental result file, which includes measurement data, an ID code identifying one of the plurality of analysis processing units, and sample information regarding the sample, to the analysis processing unit.