A servo writing system for writing servo sectors onto a disk includes a direct digital synthesizer (DDS) that forms a phase and frequency adjustable continuous wave signal based upon a reference digital clock signal. A PLL coupled to the DDS measures repeatable timing errors (RTEs) associated with the continuous wave signal and generates an output clock signal that is used to clock the writing of servo sectors onto the disk. A digital control system is coupled to the DDS and the PLL, which calculates repeatable error compensation adjustment values based on the RTEs measured using the PLL. The compensation adjustment values may be applied to the DDS such that the DDS compensates for the RTEs and such that the output clock signal used to clock the writing of the servo sectors onto the disk includes minimal RTEs.