The present invention provides for a method for configuring a laser operating system. More specifically, the system utilizes a graphical user interface (GUI) to allow an operator to interact with an embedded controller and set parameters for an optical communications transceiver. The system adjusts parameters such as laser bias and modulation currents, wavelength, qualification tests, and file management. In other words, the GUI manages configurations of a transceiver operating system. The system provides for an efficient method to design a laser transceiver and to perform and manage qualification tests. The embedded controller may contain a real time operating system that controls multiple functions in the transceiver and an optical channel. The GUI interacts with an operating system to download embedded firmware into an embedded micro controller unit (MCU). Downloading of firmware allows for multiple special programs from different sources to be integrated.