A system and method for facilitating RF pulse sequence generation and modification and for real-time sequence input modification for use in conjunction with magnetic resonance imaging equipment. A graphical user interface is provided through a display coupled to a digital computer operating as the primary control system for a magnetic resonance imaging scanner and associated hardware. Through the graphical user interface, an operator may choose or design sequences of radiofrequency pulses, gradient waveforms and other input parameters for the magnetic resonance imaging apparatus. Real-time information is also communicated to the operator through the graphical user interface allowing for real-time manipulation of the magnetic resonance imaging inputs and for displaying the magnetic resonance response thereto.