A percutaneous, intramuscular stimulation system for therapeutic electrical stimulation of select muscles of a patient includes a plurality of intramuscular stimulation electrodes (50) for implantation directly into select muscles of a patient and an external battery-operated, microprocessor-based stimulation pulse train generator (10) for generating select electrical stimulation pulse train signals (T). A plurality of insulated electrode leads (40) percutaneously, electrically interconnect the plurality of intramuscular stimulation electrodes (50) to the external stimulation pulse train generator (10), respectively. The external pulse train generator (10) includes a plurality of electrical stimulation pulse train output channels (E) connected respectively to the plurality of percutaneous electrode leads (40) and input means (24,26,28) for operator selection of stimulation pulse train parameters (PA,PD,PF) for each of the stimulation pulse train output channels (E) independently of the other channels. Visual output means (20) provides visual output data to an operator of the pulse train generator (10). Non-volatile memory means (66,68) stores the stimulation pulse train parameters for each of the plurality of stimulation pulse train output channels (E). The generator (10) includes means for generating stimulation pulse train signals (100,102) with the selected pulse train parameters on each of the plurality of stimulation pulse train output channels (E) so that stimulus pulses of the pulse train signals having the select stimulation pulse train parameters pass between the intramuscular electrodes (50) respectively connected to the stimulation pulse train output channels (E) and a reference electrode (52).